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pub:start [2019/01/28 14:56] – [ILDIS publications] admin@ildis.orgpub:start [2019/01/29 15:10] admin@ildis.org
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 ====== ILDIS publications ====== ====== ILDIS publications ======
 +
 +  * [[bib:]]
 +  * [[.notes:]]
  
 (under construction) (under construction)
- 
-Bisby, F.A., White, R.J., Macfarlane, T.D. & Babac, M.T.  
-The Vicieae Database Project: experimental uses of a monographic taxonomic database for species of vetch and pea.   
-In: J. Felsenstein, ed. //Numerical Taxonomy//, Berlin, Springer-Verlag, NATO Advanced Study Institute Series, **G1**, 1983, 625-629 
  
 Adey, M.E., Allkin, R., Bisby, F.A., White, R.J. & Macfarlane,  T.D.  Adey, M.E., Allkin, R., Bisby, F.A., White, R.J. & Macfarlane,  T.D. 
 The Vicieae Database: an experimental taxonomic monograph.   The Vicieae Database: an experimental taxonomic monograph.  
-In: R. Allkin and F.A. Bisby, eds. +In: R. Allkin and F.A. Bisby, 1984, pp. 175-188 
 +<wrap lo right>[book at 1CM]</wrap> 
 + 
 +<WRAP lo rightalign> 
 +//(Describes the Vicieae Database Project and how its morphological data set  
 +for the legume tribe Vicieae was assembled and managed  
 +(using the Exir DBMS with several purpose-written import and export utilities)  
 +in order to permit querying and the production of various printed reports.   
 +Data encoding and conversion is discussed.)// 
 +</WRAP> 
 + 
 +R. Allkin and F.A. Bisby, eds. 
 //Databases in Systematics//,  //Databases in Systematics//, 
-London, Academic Press, Systematics Association Special Volume **26**, 1984, 175-188 +London, Academic Press, Systematics Association Special Volume **26**, 1984 
-[book at 1CM]+<wrap lo right>[book at 1CM]</wrap>
  
 Allkin, R. & White, R.J.   Allkin, R. & White, R.J.  
Line 19: Line 29:
 //Classification and related methods of data analysis//,  //Classification and related methods of data analysis//, 
 Elsevier (North-Holland), Amsterdam, 1988, 653- 402  Elsevier (North-Holland), Amsterdam, 1988, 653- 402 
-[book at 8SG]+<wrap lo right>[book at 8SG]</wrap> 
 + 
 +<WRAP lo rightalign> 
 +:!: //(Notes to be completed)// 
 +</WRAP>
  
 Allkin, R., White, R.J. & Winfield, P.J.   Allkin, R., White, R.J. & Winfield, P.J.  
Line 25: Line 39:
 //Mathematical and Computer Modelling//, **16**, 1992, 1-9 //Mathematical and Computer Modelling//, **16**, 1992, 1-9
  
-White, R.J., Allkin, R. & WinfieldP.J  +Babac M.T. & BisbyF.A
-Systematic databases: the Baobab design and the Alice system  +A Chemotaxonomic Database.  
-In: Fortuner, R., ed.,  +In: R. Allkin and F.ABisby1984pp. 209-218 
-//Advances in Computer Methods for Systematic Biology: Artificial IntelligenceDatabases, Computer Vision//,  +<wrap lo right>[book at 1CM]</wrap>
-Johns Hopkins University Press, Baltimore, 1993, 297-311 +
-[book at 1CM]+
  
-ZarucchiJ.L., Winfield, P.J., Polhill, R.M., HollisS., Bisby, F.A. & AllkinR+<WRAP lo rightalign> 
-The ILDIS project on the world's legume species diversity.  +//(Describes the phytochemical database for the legume tribe Vicieae 
-In: Bisby, F.A., Russell, G.F. & Pankhurst, R.J., eds. +managed by the Exir DBMS, built as part of the Vicieae Database Project  
-//Designs for a Global Plant Species Information System//, 1993, pp. 131-144.  +and planned to be a "phase 2" project for ILDIS.)// 
-The Systematics Association Special Volume No. 48, Clarendon Press, Oxford +</WRAP> 
-[book at 1CM]+ 
 +BisbyF.A., White, R.J., MacfarlaneT.D. & BabacM.T.  
 +The Vicieae Database Project: experimental uses of a monographic taxonomic database for species of vetch and pea  
 +In: J. Felsenstein, ed. //Numerical Taxonomy//, Berlin, Springer-Verlag, NATO Advanced Study Institute Series, **G1**, 1983, 625-629 
 + 
 +Bisby, F.A., Russell, G.F. & Pankhurst, R.J., eds. 
 +//Designs for a Global Plant Species Information System//,  
 +Oxford University Press1993  
 +[the title page quotes the Clarendon Press, Oxford, 1993, but the actual publication date was February 1994]  
 +<wrap lo right>[book at 1CM]</wrap>
  
 Southon, I.W., Bisby, F.A., Buckingham, J., Harborne, J.B., Zarucchi, J.L., Polhill, R.M., Adams, B.R., Lock, J.M., White, R.J., Bowes, I., Hollis, S. & Heald, J.   Southon, I.W., Bisby, F.A., Buckingham, J., Harborne, J.B., Zarucchi, J.L., Polhill, R.M., Adams, B.R., Lock, J.M., White, R.J., Bowes, I., Hollis, S. & Heald, J.  
 //Phytochemical Dictionary of the Leguminosae//.   //Phytochemical Dictionary of the Leguminosae//.  
 Chapman & Hall, London, 1994, 1580pp  [ISBN 0 412 39770 6] Chapman & Hall, London, 1994, 1580pp  [ISBN 0 412 39770 6]
-[book at 8SG]+<wrap lo right>[book at 8SG]</wrap>
  
-White, R.J. & Allkin, R.  +<WRAP lo rightalign> 
-A strategy for the evolution of database designs.   +:!: //(Notes to be completed)// 
-InBisby, F.A., Russell, G.F. & Pankhurst, R.J., eds.,  +</WRAP>
-//Designs for a Global Plant Species Information System// +
-Oxford University Press, 1994, 284-303 +
-[book at 1CM]+
  
 Shimura, J., Ichiyanagi, Y., Hollis, S., White, R.J. & Bisby, F.A.   Shimura, J., Ichiyanagi, Y., Hollis, S., White, R.J. & Bisby, F.A.  
Line 57: Line 75:
 Roskov, Y.R., Bisby, F.A., Zarucchi, J.L., Schrire, B.D. & White, R.J.   Roskov, Y.R., Bisby, F.A., Zarucchi, J.L., Schrire, B.D. & White, R.J.  
 World database of Legumes - results from the first twenty years of the ILDIS project.   World database of Legumes - results from the first twenty years of the ILDIS project.  
-In: //Information Systems on Biodiversity of Species & Ecosystems: Scientific Program & Abstracts//, St. Petersburg, 2003, 6-7 +In: //Information Systems on Biodiversity of Species & Ecosystems:  
- +Scientific Program & Abstracts//, St. Petersburg, 2003, 6-7
-White, R.J., Jones, A.C., Gray, W.A. & Bisby, F.A.   +
-Creating frameworks to support interoperability of biodiversity data.   +
-//Proc. BNCOD21 Bioinformatics Workshop//,  +
-Heriot-Watt University, Edinburgh, 2004, 92-105   +
-[ISBN 1-904410-12-X] +
-[book at 8SG]+
  
 Roskov Y.R., Bisby F.A., Zarucchi J.L., Schrire B.D. & White R.J. (eds.)   Roskov Y.R., Bisby F.A., Zarucchi J.L., Schrire B.D. & White R.J. (eds.)  
Line 72: Line 84:
 [CD-Rom:  ISBN 0 7049 1248 1] [CD-Rom:  ISBN 0 7049 1248 1]
 (also available online at https://ildis.org) (also available online at https://ildis.org)
 +
 +White, R.J., Allkin, R. & Winfield, P.J.  
 +Systematic databases: the Baobab design and the Alice system.  
 +In: Fortuner, R., ed., 
 +//Advances in Computer Methods for Systematic Biology: 
 +Artificial Intelligence, Databases, Computer Vision//, 
 +Johns Hopkins University Press, Baltimore, 1993, 297-311
 +<wrap lo right>[book at 1CM]</wrap>
 +
 +<WRAP lo rightalign>
 +//(Describes four aspects of taxonomic data 
 +(the taxon hierarchy, character variability and dependence, and missing values) 
 +and how these are addressed in the unimplemented "Baobab" taxonomic database design 
 +and in the Alice software suite which was specifically implemented 
 +to handle these issues and provide a complete DBMS 
 +for taxonomists and other biologists working with taxonomically organised data sets.)//
 +</WRAP>
 +
 +White, R.J. & Allkin, R. 
 +A strategy for the evolution of database designs.  
 +In: Bisby, F.A., Russell, G.F. & Pankhurst, R.J., 1993, pp. 284-303
 +
 +<WRAP lo rightalign>
 +//(Emphasised the importance of data exchange mechanisms (such as Delta and XDF), 
 +including the use of XDF by the Alice software to merge contributed data sets, 
 +rather than relying on a single common data structure for all databases.)//
 +</WRAP>
 +
 +White, R.J., Jones, A.C., Gray, W.A. & Bisby, F.A.  
 +Creating frameworks to support interoperability of biodiversity data.  
 +//Proc. BNCOD21 Bioinformatics Workshop//, 
 +Heriot-Watt University, Edinburgh, 2004, 92-105  
 +[ISBN 1-904410-12-X]
 +<wrap lo right>[book at 8SG]</wrap>
 +
 +<WRAP lo rightalign>
 +:!: //(Notes to be completed)//
 +</WRAP>
  
 White, R.J.   White, R.J.  
 Linking biodiversity databases:  preparing species diversity information sources by assembling, merging and linking databases.   Linking biodiversity databases:  preparing species diversity information sources by assembling, merging and linking databases.  
 In: Curry, G.B. & Humphries, C.J., eds.,  In: Curry, G.B. & Humphries, C.J., eds., 
-//Biodiversity Databases: Techniques, Politics and Applications//, CRC Press, 2007, 111-128, ISBN 0-415-33290-7   +//Biodiversity Databases: Techniques, Politics and Applications//,  
-[book at 1CM]+CRC Press, Systematics Association Special Volume **73**, 2007, 111-128, ISBN 0-415-33290-7   
 +<wrap lo right>[book at 1CM]</wrap>
  
-===== Notes (primarily for the Anne Bruneau legume history MS=====+<WRAP lo rightalign> 
 +//(Explains how large collaborative biological databases  
 +(such as the ERMS checklist and the ILDIS World Database of Legumes)  
 +were assembled by //**merging**// contributed data sets,  
 +and contrasts this with //**linking**// databases together into larger systems  
 +in initiatives such as the Species 2000 Dynamic Checklist  
 +and its further development in the Spice project.   
 +Databases such as ILDIS and the Species 2000 Catalogue of Life are seen as  
 +taxonomic backbones to which a variety of further data sets can be linked  
 +to expand the range of data available to the user.   
 +The reliability of such "onward links" in the presence of factors  
 +such as differing taxonomic treatments in the various data sets is discussed,  
 +with a proposed solution using "cross-maps" prepared using the Litchi software, 
 +which was developed further in the "Biodiversity World" and "Species 2000 Europa" projects.)// 
 +</WRAP>
  
-==== History ====+Zarucchi, J.L., Winfield, P.J., Polhill, R.M., Hollis, S., Bisby, F.A. & Allkin, R. 
 +The ILDIS project on the world's legume species diversity.  
 +In: Bisby, F.A., Russell, G.F. & Pankhurst, R.J., 1993, pp. 131-144  
 +<wrap lo right>[book at 1CM]</wrap>
  
-According to Peter Brewer's PhD project first year report (November 2001),  +<WRAP lo rightalign> 
-ILDIS (Bisby //et al//. 20002001)  +//(Describes the assembly of the ILDIS database from regional contributions  
-began in 1985 (Zarucchi //et al//.1993)  +to make the "Phase 1" checklist with geographical data  
-and was (at version 5 in 2001) "nearing completion"+and a few morphological and plant-use fields, with full citation of references,  
 +and explains current and planned future activities aiming to use this as a "backbone"  
 +to link in "Phase 2" data sets, especially phytochemistry (Babac & Bisby, 1984and nodulation data.   
 +Emphasises the role of ILDIS in providing services to users,  
 +and interestingly assumes that scientists will send their requests to "enquiry centres",  
 +thus failing to foresee the rapid growth of the Internet and especially the World-Wide Web,  
 +although an experimental online data retrieval was planned.)// 
 +</WRAP>
  
-==== Descendants ==== 
- 
-ILDIS was was of the first two or three(?) GSDs contributing to the Species 2000 Catalogue of Life.   
- 
-Burnett J., IOPI: genesis of GPSIS?  
-In: Bisby, F.A., Russell, G.F. & Pankhurst, R.J., eds.,  
-//Designs for a Global Plant Species Information System//,  
-Oxford University Press, 1994, 334-342 
-(IOPI could be viewed as a step between ILDIS and CoL.)  
-[book at 8SG] 
  
pub/start.txt · Last modified: 2019/01/29 15:11 by admin@ildis.org