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pub:start [2019/01/29 15:07] – [ILDIS publications] admin@ildis.orgpub:start [2019/01/29 15:11] (current) – admin@ildis.org
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 ====== ILDIS publications ====== ====== ILDIS publications ======
  
-(under construction) +  * [[.bib:]] 
- +  * [[.notes:]]
-Adey, M.E., Allkin, R., Bisby, F.A., White, R.J. & Macfarlane,  T.D.  +
-The Vicieae Database: an experimental taxonomic monograph.   +
-In: R. Allkin and F.A. Bisby, 1984, pp. 175-188 +
-<wrap lo right>[book at 1CM]</wrap> +
- +
-<WRAP lo rightalign> +
-//(Describes the Vicieae Database Project and how its morphological data set  +
-for the legume tribe Vicieae was assembled and managed  +
-(using the Exir DBMS with several purpose-written import and export utilities)  +
-in order to permit querying and the production of various printed reports.   +
-Data encoding and conversion is discussed.)// +
-</WRAP> +
- +
-R. Allkin and F.A. Bisby, eds.  +
-//Databases in Systematics//,  +
-London, Academic Press, Systematics Association Special Volume **26**, 1984.  +
-<wrap lo right>[book at 1CM]</wrap> +
- +
-Allkin, R. & White, R.J.   +
-Data management models for biological classification.   +
-In: Bock, H.H., ed.,  +
-//Classification and related methods of data analysis//,  +
-Elsevier (North-Holland), Amsterdam, 1988, 653- 402  +
-<wrap lo right>[book at 8SG]</wrap> +
- +
-<WRAP lo rightalign> +
-:!: //(Notes to be completed)// +
-</WRAP> +
- +
-Allkin, R., White, R.J. & Winfield, P.J.   +
-Handling the structure of biological data.   +
-//Mathematical and Computer Modelling//, **16**, 1992, 1-9 +
- +
-Babac M.T. & Bisby, F.A. +
-A Chemotaxonomic Database.  +
-In: R. Allkin and F.A. Bisby, 1984, pp. 209-218 +
-<wrap lo right>[book at 1CM]</wrap> +
- +
-<WRAP lo rightalign> +
-//(Describes the phytochemical database for the legume tribe Vicieae,  +
-managed by the Exir DBMS, built as part of the Vicieae Database Project  +
-and planned to be a "phase 2" project for ILDIS.)// +
-</WRAP> +
- +
-Bisby, F.A., White, R.J., Macfarlane, T.D. & Babac, M.T.  +
-The Vicieae Database Project: experimental uses of a monographic taxonomic database for species of vetch and pea.   +
-In: J. Felsenstein, ed. //Numerical Taxonomy//, Berlin, Springer-Verlag, NATO Advanced Study Institute Series, **G1**, 1983, 625-629 +
- +
-Bisby, F.A., Russell, G.F. & Pankhurst, R.J., eds.,  +
-//Designs for a Global Plant Species Information System//,  +
-Oxford University Press, 1993  +
-[the title page quotes the Clarendon Press, Oxford, 1993, but the actual publication date was February 1994]  +
-<wrap lo right>[book at 1CM]</wrap> +
- +
-Southon, I.W., Bisby, F.A., Buckingham, J., Harborne, J.B., Zarucchi, J.L., Polhill, R.M., Adams, B.R., Lock, J.M., White, R.J., Bowes, I., Hollis, S. & Heald, J.   +
-//Phytochemical Dictionary of the Leguminosae//.   +
-Chapman & Hall, London, 1994, 1580pp  [ISBN 0 412 39770 6] +
-<wrap lo right>[book at 8SG]</wrap> +
- +
-<WRAP lo rightalign> +
-:!: //(Notes to be completed)// +
-</WRAP> +
- +
-Shimura, J., Ichiyanagi, Y., Hollis, S., White, R.J. & Bisby, F.A.   +
-A linked rhizobia and plant host information system (RAPHIS) on the World-wide Web.   +
-//Microbiol. Cult. Coll.//, **14**, 1997, 23-32 +
- +
-Roskov, Y.R., Bisby, F.A., Zarucchi, J.L., Schrire, B.D. & White, R.J.   +
-World database of Legumes - results from the first twenty years of the ILDIS project.   +
-In: //Information Systems on Biodiversity of Species & Ecosystems:  +
-Scientific Program & Abstracts//, St. Petersburg, 2003, 6-7 +
- +
-Roskov Y.R., Bisby F.A., Zarucchi J.L., Schrire B.D. & White R.J. (eds.)   +
-//ILDIS World Database of Legumes:  draft checklist, version 10//  +
-[published June 2006, but CD shows November 2005 date].   +
-ILDIS, Reading, UK, 2006  +
-[CD-Rom:  ISBN 0 7049 1248 1] +
-(also available online at https://ildis.org) +
- +
-White, R.J., Allkin, R. & Winfield, P.J.   +
-Systematic databases: the Baobab design and the Alice system.   +
-In: Fortuner, R., ed.,  +
-//Advances in Computer Methods for Systematic Biology:  +
-Artificial Intelligence, Databases, Computer Vision//,  +
-Johns Hopkins University Press, Baltimore, 1993, 297-311 +
-<wrap lo right>[book at 1CM]</wrap> +
- +
-<WRAP lo rightalign> +
-//(Describes four aspects of taxonomic data  +
-(the taxon hierarchy, character variability and dependence, and missing values)  +
-and how these are addressed in the unimplemented "Baobab" taxonomic database design  +
-and in the Alice software suite which was specifically implemented  +
-to handle these issues and provide a complete DBMS  +
-for taxonomists and other biologists working with taxonomically organised data sets.)// +
-</WRAP> +
- +
-White, R.J. & Allkin, R.  +
-A strategy for the evolution of database designs.   +
-In: Bisby, F.A., Russell, G.F. & Pankhurst, R.J., 1993, pp. 284-303 +
- +
-<WRAP lo rightalign> +
-//(Emphasised the importance of data exchange mechanisms (such as Delta and XDF),  +
-including the use of XDF by the Alice software to merge contributed data sets,  +
-rather than relying on a single common data structure for all databases.)// +
-</WRAP> +
- +
-White, R.J., Jones, A.C., Gray, W.A. & Bisby, F.A.   +
-Creating frameworks to support interoperability of biodiversity data.   +
-//Proc. BNCOD21 Bioinformatics Workshop//,  +
-Heriot-Watt University, Edinburgh, 2004, 92-105   +
-[ISBN 1-904410-12-X] +
-<wrap lo right>[book at 8SG]</wrap> +
- +
-<WRAP lo rightalign> +
-:!: //(Notes to be completed)// +
-</WRAP> +
- +
-White, R.J.   +
-Linking biodiversity databases:  preparing species diversity information sources by assembling, merging and linking databases.   +
-In: Curry, G.B. & Humphries, C.J., eds.,  +
-//Biodiversity Databases: Techniques, Politics and Applications//,  +
-CRC Press, Systematics Association Special Volume **73**, 2007, 111-128, ISBN 0-415-33290-7   +
-<wrap lo right>[book at 1CM]</wrap> +
- +
-<WRAP lo rightalign> +
-//(Explains how large collaborative biological databases  +
-(such as the ERMS checklist and the ILDIS World Database of Legumes)  +
-were assembled by //**merging**// contributed data sets,  +
-and contrasts this with //**linking**// databases together into larger systems  +
-in initiatives such as the Species 2000 Dynamic Checklist  +
-and its further development in the Spice project.   +
-Databases such as ILDIS and the Species 2000 Catalogue of Life are seen as  +
-taxonomic backbones to which a variety of further data sets can be linked  +
-to expand the range of data available to the user.   +
-The reliability of such "onward links" in the presence of factors  +
-such as differing taxonomic treatments in the various data sets is discussed,  +
-with a proposed solution using "cross-maps" prepared using the Litchi software, +
-which was developed further in the "Biodiversity World" and "Species 2000 Europa" projects.)// +
-</WRAP> +
- +
-Zarucchi, J.L., Winfield, P.J., Polhill, R.M., Hollis, S., Bisby, F.A. & Allkin, R. +
-The ILDIS project on the world's legume species diversity.  +
-In: Bisby, F.A., Russell, G.F. & Pankhurst, R.J., 1993, pp. 131-144  +
-<wrap lo right>[book at 1CM]</wrap> +
- +
-<WRAP lo rightalign> +
-//(Describes the assembly of the ILDIS database from regional contributions  +
-to make the "Phase 1" checklist with geographical data  +
-and a few morphological and plant-use fields, with full citation of references,  +
-and explains current and planned future activities aiming to use this as a "backbone"  +
-to link in "Phase 2" data sets, especially phytochemistry (Babac & Bisby, 1984) and nodulation data.   +
-Emphasises the role of ILDIS in providing services to users,  +
-and interestingly assumes that scientists will send their requests to "enquiry centres",  +
-thus failing to foresee the rapid growth of the Internet and especially the World-Wide Web,  +
-although an experimental online data retrieval was planned.)// +
-</WRAP> +
- +
-===== Notes (primarily for the Anne Bruneau legume history MS) ===== +
- +
-Google doc at https://docs.google.com/document/d/1MZVH4kTJz3LRChcRKe61TulDcMfhwowE7yfUm0Oidbo/edit +
- +
- +
-==== History ==== +
- +
-According to Peter Brewer's PhD project first year report (November 2001),  +
-ILDIS (Bisby //et al//. 2000, 2001)  +
-began in 1985 (Zarucchi //et al//., 1993)  +
-and was (at version 5 in 2001) "nearing completion".  +
- +
-The 5th ILDIS Workshop was held at Reading (17-18 November 2005)  +
-immediately following  +
-the 7th UK Legume Workshop held at Kew (15 November 2005).  +
- +
- +
-==== Descendants ==== +
- +
-ILDIS was was of the first two or three(?) GSDs contributing to the Species 2000 Catalogue of Life.   +
- +
-Burnett J., IOPI: genesis of GPSIS?  +
-In: Bisby, F.A., Russell, G.F. & Pankhurst, R.J., eds.,  +
-//Designs for a Global Plant Species Information System//,  +
-Oxford University Press, 1994, 334-342 +
-(IOPI could be viewed as a step between ILDIS and CoL.)  +
-[book at 8SG]+
  
pub/start.txt · Last modified: 2019/01/29 15:11 by admin@ildis.org