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pub:bib:start [2019/01/29 15:11] (current)
admin@ildis.org created
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 +====== ILDIS annotated bibliography ======
 +
 +(under construction)
 +
 +Adey, M.E., Allkin, R., Bisby, F.A., White, R.J. & Macfarlane, ​ T.D. 
 +The Vicieae Database: an experimental taxonomic monograph.  ​
 +In: R. Allkin and F.A. Bisby, 1984, pp. 175-188
 +<wrap lo right>​[book at 1CM]</​wrap>​
 +
 +<WRAP lo rightalign>​
 +//​(Describes the Vicieae Database Project and how its morphological data set 
 +for the legume tribe Vicieae was assembled and managed ​
 +(using the Exir DBMS with several purpose-written import and export utilities) ​
 +in order to permit querying and the production of various printed reports.  ​
 +Data encoding and conversion is discussed.)//​
 +</​WRAP>​
 +
 +R. Allkin and F.A. Bisby, eds. 
 +//Databases in Systematics//, ​
 +London, Academic Press, Systematics Association Special Volume **26**, 1984. 
 +<wrap lo right>​[book at 1CM]</​wrap>​
 +
 +Allkin, R. & White, R.J.  ​
 +Data management models for biological classification.  ​
 +In: Bock, H.H., ed., 
 +//​Classification and related methods of data analysis//, ​
 +Elsevier (North-Holland),​ Amsterdam, 1988, 653- 402 
 +<wrap lo right>​[book at 8SG]</​wrap>​
 +
 +<WRAP lo rightalign>​
 +:!: //(Notes to be completed)//​
 +</​WRAP>​
 +
 +Allkin, R., White, R.J. & Winfield, P.J.  ​
 +Handling the structure of biological data.  ​
 +//​Mathematical and Computer Modelling//,​ **16**, 1992, 1-9
 +
 +Babac M.T. & Bisby, F.A.
 +A Chemotaxonomic Database. ​
 +In: R. Allkin and F.A. Bisby, 1984, pp. 209-218
 +<wrap lo right>​[book at 1CM]</​wrap>​
 +
 +<WRAP lo rightalign>​
 +//​(Describes the phytochemical database for the legume tribe Vicieae, ​
 +managed by the Exir DBMS, built as part of the Vicieae Database Project ​
 +and planned to be a "phase 2" project for ILDIS.)//
 +</​WRAP>​
 +
 +Bisby, F.A., White, R.J., Macfarlane, T.D. & Babac, M.T. 
 +The Vicieae Database Project: experimental uses of a monographic taxonomic database for species of vetch and pea.  ​
 +In: J. Felsenstein,​ ed. //Numerical Taxonomy//, Berlin, Springer-Verlag,​ NATO Advanced Study Institute Series, **G1**, 1983, 625-629
 +
 +Bisby, F.A., Russell, G.F. & Pankhurst, R.J., eds., 
 +//Designs for a Global Plant Species Information System//, ​
 +Oxford University Press, 1993 
 +[the title page quotes the Clarendon Press, Oxford, 1993, but the actual publication date was February 1994] 
 +<wrap lo right>​[book at 1CM]</​wrap>​
 +
 +Southon, I.W., Bisby, F.A., Buckingham, J., Harborne, J.B., Zarucchi, J.L., Polhill, R.M., Adams, B.R., Lock, J.M., White, R.J., Bowes, I., Hollis, S. & Heald, J.  ​
 +//​Phytochemical Dictionary of the Leguminosae//​.  ​
 +Chapman & Hall, London, 1994, 1580pp ​ [ISBN 0 412 39770 6]
 +<wrap lo right>​[book at 8SG]</​wrap>​
 +
 +<WRAP lo rightalign>​
 +:!: //(Notes to be completed)//​
 +</​WRAP>​
 +
 +Shimura, J., Ichiyanagi, Y., Hollis, S., White, R.J. & Bisby, F.A.  ​
 +A linked rhizobia and plant host information system (RAPHIS) on the World-wide Web.  ​
 +//​Microbiol. Cult. Coll.//, **14**, 1997, 23-32
 +
 +Roskov, Y.R., Bisby, F.A., Zarucchi, J.L., Schrire, B.D. & White, R.J.  ​
 +World database of Legumes - results from the first twenty years of the ILDIS project.  ​
 +In: //​Information Systems on Biodiversity of Species & Ecosystems: ​
 +Scientific Program & Abstracts//,​ St. Petersburg, 2003, 6-7
 +
 +Roskov Y.R., Bisby F.A., Zarucchi J.L., Schrire B.D. & White R.J. (eds.)  ​
 +//ILDIS World Database of Legumes: ​ draft checklist, version 10// 
 +[published June 2006, but CD shows November 2005 date].  ​
 +ILDIS, Reading, UK, 2006 
 +[CD-Rom: ​ ISBN 0 7049 1248 1]
 +(also available online at https://​ildis.org)
 +
 +White, R.J., Allkin, R. & Winfield, P.J.  ​
 +Systematic databases: the Baobab design and the Alice system.  ​
 +In: Fortuner, R., ed., 
 +//Advances in Computer Methods for Systematic Biology: ​
 +Artificial Intelligence,​ Databases, Computer Vision//, ​
 +Johns Hopkins University Press, Baltimore, 1993, 297-311
 +<wrap lo right>​[book at 1CM]</​wrap>​
 +
 +<WRAP lo rightalign>​
 +//​(Describes four aspects of taxonomic data 
 +(the taxon hierarchy, character variability and dependence, and missing values) ​
 +and how these are addressed in the unimplemented "​Baobab"​ taxonomic database design ​
 +and in the Alice software suite which was specifically implemented ​
 +to handle these issues and provide a complete DBMS 
 +for taxonomists and other biologists working with taxonomically organised data sets.)//
 +</​WRAP>​
 +
 +White, R.J. & Allkin, R. 
 +A strategy for the evolution of database designs.  ​
 +In: Bisby, F.A., Russell, G.F. & Pankhurst, R.J., 1993, pp. 284-303
 +
 +<WRAP lo rightalign>​
 +//​(Emphasised the importance of data exchange mechanisms (such as Delta and XDF), 
 +including the use of XDF by the Alice software to merge contributed data sets, 
 +rather than relying on a single common data structure for all databases.)//​
 +</​WRAP>​
 +
 +White, R.J., Jones, A.C., Gray, W.A. & Bisby, F.A.  ​
 +Creating frameworks to support interoperability of biodiversity data.  ​
 +//Proc. BNCOD21 Bioinformatics Workshop//, ​
 +Heriot-Watt University, Edinburgh, 2004, 92-105  ​
 +[ISBN 1-904410-12-X]
 +<wrap lo right>​[book at 8SG]</​wrap>​
 +
 +<WRAP lo rightalign>​
 +:!: //(Notes to be completed)//​
 +</​WRAP>​
 +
 +White, R.J.  ​
 +Linking biodiversity databases: ​ preparing species diversity information sources by assembling, merging and linking databases.  ​
 +In: Curry, G.B. & Humphries, C.J., eds., 
 +//​Biodiversity Databases: Techniques, Politics and Applications//, ​
 +CRC Press, Systematics Association Special Volume **73**, 2007, 111-128, ISBN 0-415-33290-7  ​
 +<wrap lo right>​[book at 1CM]</​wrap>​
 +
 +<WRAP lo rightalign>​
 +//(Explains how large collaborative biological databases ​
 +(such as the ERMS checklist and the ILDIS World Database of Legumes) ​
 +were assembled by //​**merging**//​ contributed data sets, 
 +and contrasts this with //​**linking**//​ databases together into larger systems ​
 +in initiatives such as the Species 2000 Dynamic Checklist ​
 +and its further development in the Spice project.  ​
 +Databases such as ILDIS and the Species 2000 Catalogue of Life are seen as 
 +taxonomic backbones to which a variety of further data sets can be linked ​
 +to expand the range of data available to the user.  ​
 +The reliability of such "​onward links" in the presence of factors ​
 +such as differing taxonomic treatments in the various data sets is discussed, ​
 +with a proposed solution using "​cross-maps"​ prepared using the Litchi software,
 +which was developed further in the "​Biodiversity World" and "​Species 2000 Europa"​ projects.)//​
 +</​WRAP>​
 +
 +Zarucchi, J.L., Winfield, P.J., Polhill, R.M., Hollis, S., Bisby, F.A. & Allkin, R.
 +The ILDIS project on the world'​s legume species diversity. ​
 +In: Bisby, F.A., Russell, G.F. & Pankhurst, R.J., 1993, pp. 131-144 ​
 +<wrap lo right>​[book at 1CM]</​wrap>​
 +
 +<WRAP lo rightalign>​
 +//​(Describes the assembly of the ILDIS database from regional contributions ​
 +to make the "Phase 1" checklist with geographical data 
 +and a few morphological and plant-use fields, with full citation of references, ​
 +and explains current and planned future activities aiming to use this as a "​backbone" ​
 +to link in "Phase 2" data sets, especially phytochemistry (Babac & Bisby, 1984) and nodulation data.  ​
 +Emphasises the role of ILDIS in providing services to users, ​
 +and interestingly assumes that scientists will send their requests to "​enquiry centres", ​
 +thus failing to foresee the rapid growth of the Internet and especially the World-Wide Web, 
 +although an experimental online data retrieval was planned.)//
 +</​WRAP>​
 +
  
pub/bib/start.txt · Last modified: 2019/01/29 15:11 by admin@ildis.org